People
Here's the people collaborating on the Time Series Center:
Scientists
Lead Investigator: Pavlos Protopapas
Pavlos Protopapas received his PhD in 1996 at the University of Pennsylvania in theoretical nuclear physics. His thesis
provided a solution to the Coriolis attenuation problem. He served as the associate director of the National Scalable
Cluster Project (NSCP), one of the initial attempts at large scale distributing computing on a grid-like model. Protopapas
is a member of the outer solar system team for Pan-STARRS and the TAOS project. His research interests are in planetary
transits, the outer solar system, photometric variability, microlensing and in computer science on large databases and data mining
in astronomy in particular in feature extraction, anomaly detection, and similarity searches in time series.
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Charles Alcock
Charles Alcock is the Directer of the Harvard-Smithsonian Center for Astrophysics
(CfA) in Cambridge, MA.
Through his initiation and leadership of the MACHO Project, took astronomical
analysis into the multi-terabyte regime. This project is well known for the discovery of
gravitational microlensing, the rare magnification of the light of distant stars by otherwise
invisible massive objects. At the end the
MACHO Project, Alcock initiated the Southern Edgeworth-Kuiper Survey, using the
same hardware to search for new solar system objects. He is the US PI for the TAOS Project,
which will be one of the test-beds for the
time series center.
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Roni Khardon
Roni Khardon obtained his Ph.D. in Computer Science from Harvard University, under Prof. Leslie Valiant.
He joined the Computer Science department at Tufts University in Fall 2000, where he is now an Associate Professor.
Prior to moving to Tufts in 2000 he held a faculty position in the University of
Edinburgh in Scotland.
Khardon's interests include theoretical foundations, efficient algorithms, practical aspects and applications of
machine learning, data mining and knowledge representation.
Concrete problems range from learning to classify objects, learning in order to act, and
data mining of frequent patterns. A particular focus over the last few years has been solving these in
contexts where objects and relations give a natural way to describe the problems.
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Carla Brodley
Carla E. Brodley is a professor in the Department of Computer Science at Tufts
University. She is currently serving as acting chair of the Department of Computer Science at Tufts.
She received her PhD in computer science from the University of
Massachusetts, at Amherst in 1994. From 1994-2004, she was on the faculty of the
School of Electrical Engineering at Purdue University.
She researches fundamental machine learning and data mining issues, including
anomaly detection, feature selection for unsupervised learning, clustering of high dimensional
data and correlation analysis. In particular, she is well known for the successful application
of machine learning and data mining to the areas of remote sensing, content-based image
retrieval, covert-channel detection in networks, and user behavioral modeling for intrusion
detection.
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Eamonn Keogh
Eamonn Keogh’s research areas include machine learning and information retrieval, specializing in techniques for solving similarity and indexing problems in time-series datasets. He has authored more than 90 papers. He received the SIGMOD 2001 best paper award, and runner up best paper award in KDD 1997. In 2000, he was nominated as a teaching assistant consultant at UC Irvine, where he received a campus-wide award for teaching excellence in 1998. While completing his Ph.D. degree, he worked as a head teaching assistant, lecturer and research assistant. Dr. Keogh is a member of ACM, SIGMOD, SIGKDD and AAAI.
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Staff and Postdocs
Rahul Dave
Rahul Dave is a computational scientist at the IIC.
He receiving his doctorate in Astrophysics from the University of Pennsylvania in 2002. His thesis
included the first systematic study of the effects of dark energy on the expansion history and fluctuation
development in the universe. He was Associate Director of the Eniac2000 project, an early large scale commodity cluster
effort at the University of Pennsylvania. He is a member of the TAOS project, which
is looking for TNOs in the outer solar system. His current research
efforts are directed to the development of search and database technology to make almost real-time
queries on metadata and morphology aspects of large databases of time-series possible.
Patrick Ohiomoba
Patrick Ohiomoba is a Sr. Systems Administrator at the IIC. He holds a B.A. in Applied Mathematics (with a specialization
in Chemistry) from Harvard University, and he is currently a candidate for the S.M. degree in the School of Engineering and
Applied Sciences at Harvard.
Patrick's professional interests include open source technologies, scientific computing, agile web applications frameworks,
probabilistic informatics, distributed/parallel computing, and systems programming/engineering.
Students
Gabriel Wachman
Gabriel Wachman is a Ph.D. candidate at Tufts University, working under Prof. Roni Khardon.
His research focuses on learning from structured data, and in understanding the effects of margin on learning algorithms.
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Steve Pember
Steve Pember is a Masters/PhD student at Tufts University, working with
Carla Brodley. His current research focuses on improving techniques for
fast similarity search of light curves.
Umaa Rebbapragada
Umaa is currently a Ph.D. student in the computer science department at Tufts University.
Her advisor is Carla Brodley. She received a B.A. in Mathematics
from the University of California, Berkeley and worked as a software engineer at the San
Francisco-based internet media company CNET Networks.
For her master's research, she developed a technique to identify mislabeled instances in training data by assigning a
confidence on the instance's cleanliness and using that confidence as a weight during classifier training.
Her area of research is machine learning/data mining. She currently
focuses on the problem of anomaly detection in photometric time series.
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Dae-Won Kim
Dae-Won is a visiting student from Yonsei student in Seoul, Korea, where he is pursuing his Ph.D. under
Professor Yong-Ik Byun. He is a member of the TAOS collaboration.
He will be working with Dr. Pavlos Protopapas and Prof. Charles Alcock
at the Smithsonian Astrophysical Observatory(SAO) and the IIC on
planetary transits.
Taryn Nihei
Taryn Nihei is a student of Charles Alcock at the University of Pennsylvania and the CfA in
Cambridge, MA. She is presently writing her doctoral thesis on light curve analysis.
Dan Preston
Dan is a recent Brandeis University graduate, majoring in Computer Science with a senior thesis study involving Time Series. His research involves time series analysis, currently using methods in scan statistics and optimization algorithms.
Federica Bianco
Federica Bianco is Smithsonian predoctoral fellow a graduate student at the University of Pennsylvania.
Her work involves searching for short rare events in a high cadence time series.
In particular searching for trans-neptunian bodies occultation signatures with the goal of producing constraints on solar system formation models.
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Interns
Samuel Chen
Samuel Chen was a summer Intern at the TSC at IIC in the summer of 2007. He worked on wavelength
techniques in the analysis of time series. He is currently teaching in China.
Evan Morikawa
Evan Morikawa is a sophomore at Olin College in Needham, MA. He was an intern at the TSC at IIC in
the summer of 2007. He developed Filterflow, an innovative workflow application for applying filters to light
curves in a reusable, example-to-batch fashion, fronted by a simple and intuitive GUI.
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David Kosslyn
Davis Kosslyn is a freshman at Harvard University. He was an intern at the TSC at IIC in the summer
of 2007. He worked on database enabling the TAOS light curves.
Affiliates
John Rice
John Rice is Professor of Statistics at the University of California at Berkeley.
He is interested in formulating methods for analyzing data that arise in the form of random
functions, such as time series, and which involve large quantities of data and computationally intensive
analysis. His work with graduate student James Reimann led
to algorithms for identifying variable stars in the MACHO data base. Much of his recent work has centered around two projects in astronomy:
detecting objects in the outer regions of the solar system (the Kuiper Belt) and detecting gamma-ray pulsars.
The probability of occultation events is so
low that it will be necessary to conduct 100 billion measurements per year in order to detect the ten to four
thousand such occultation events expected. Thus, foremost among the statistical problems is the necessity of
developing methods to detect very rare, faint events in very large quantities of data. The statistical challenge
in gamma-ray pulsars to infer from a sequence of arrival times of photons, whether the source is
periodic, corresponding to a pulsar, or whether it is constant, corresponding to background radiation.
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Rosanne Di Stefano
Rosanne Di Stefano is an astrophysicist at the CfA. Her research interests
are in microlensing and mesolensing, the study of close binary systems, and
X-ray emission from galaxies. She was trained in high-energy theoretical
physics. She became interested in time series analysis during the early
1990s, when she began to participate in studies of non-linear dynamics
at a workshop at the Aspen Center for Physics. Her first project in
astrophysics was to apply nearest-neighbor phase space techniques to the
study of astronomical data sets. Although work on certain well-studied
variable stars had demonstrated feasibility, most efforts by the small
community of people working on such projects met with only limited success,
because the quality of the data was not yet good enough. The well-sampled
data sets we will work with, will allow these types of investigations to
be successful.